Dear OS X Coot users:
I've updated coot to use a stand-alone refmac, as well as the CCP4 open-source libraries, so all dependencies on proprietary parts of CCP4 should no longer be present.
If you want a recent pre-release, just install "coot". If it isn't recent enough, either email me, or just grab a pre-compiled nightly version.
You can also do it yourself, if you are in a hurry, just by editing the file
/sw/fink/dists/stable/main/finkinfo/sci/coot.info, changing line 3 (the Revision number) and the corresponding checksum (line 8).
The stand-alone packages will continue to be based upon automatic nightly builds, available here:
http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Stand-Alone_Coot
or here: http://psbmini.ucsc.edu/~wgscott/coot/?C=M;O=D
Please let me know if any of these are problematic.
Showing posts with label COOT. Show all posts
Showing posts with label COOT. Show all posts
Tuesday, August 27, 2013
Sunday, July 28, 2013
Coot 0.7.1 stable is now available
Fairly recently, I created a fink package for rdkit, which coot now depends upon (and makes good use of).
See further details here.
Tuesday, October 2, 2012
Coot 0.7 stable is now available
The OS X fink and pre-build Coot packages are now available.
See further details here.
Wednesday, September 12, 2012
Coot updated in fink to 0.7-pre-1-4408
Fix for Python problem in 10.8
Coot, for whatever reason, insisted upon linking to the system's python library rather than fink's python library, and this created problems for at least a subset of users.
Huw Jenkins suggested using the following approach, which has gotten me out of a few such binds in the past as well:
install_name_tool -change /System/Library/Frameworks/Python.framework/Versions/2.7/Python %p/lib/python2.7/config/libpython2.7.dylib %i/bin/coot-real
Briefly, it works.
Fix for compile problem introduced recently.
perl -pi -e 's|lidia_LDFLAGS = -Wl,--export-dynamic||g' lbg/Makefile
The compiler don't take kindly to --export-dynamic
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